This is a list of best practices references for FAIR Computational Workflows. Please help us by contributing to this list!

General FAIR & workflow practices

• Dockstore: Best Practices for Secure and FAIR Workflows
• Ten simple rules for making a software tool workflow-ready
• Ten simple fules for reproducible computational research
• Ten simple rules for responsible big data research
• Ten simple rules for documenting scientific software
• Streamlining data-intensive biology with workflow systems
• Galaxy Training Network: FAIR Data, Workflows, and Research
• Galaxy Training Network: Foundations of Data Science

Best practices for Common Workflow Language

• Common Workflow Language User Guide: Recommended Practices
• Common Workflow Language User guide: Metadata & Authorship
• Dockstore: CWL Best Practices
• Arvados: Best Practices for writing CWL
• BioExcel: Creating workflows with Common Workflow Language

Best practices for Galaxy

• IWC: guidelines for Galaxy workflows

Best practices for Snakemake

• Snakemake Workflows Catalog guidelines

Best practices for Nextflow

• nf-core pipeline structure